species:   Clros
pid:       PID1841
parent:    cro-mir-9
paralog:   
locus:     CADEHS020000108.2:42054-42142
matures:   ['UCGGACGUAUAUUGACUACUC', 'GAAGUUGAUAUCGAGU']
srr:       ERR5950923
genome:    /Users/jax/+Genomes/Fungal_genomes/Clros.GCA_902827195.2_C_rosea_IK726_genomic.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Piombo2021-ru.ERR5950923.cram CADEHS020000108.2:42054-42142

10 out of bounds
29 alignments
29 proper strand
29 stranded perfect matches

****************                                                  ***********************
GAAGUUGAUAUCGAGUCUGCAGUACCAAUCUCUGAAAUUUCUAUGGCAGCAAAUCACGUACUGCAACCUCGGACGUAUAUUGACUACUC
..(((((((((((((..((((((((......(((..((....))..)))........))))))))..)))).....)))))))))....
--------------------------------------------------------------------UCGGACGUAUAUUGACUACUC l=21 a=22 c
GAAGUUGAUAUCGAGU------------------------------------------------------------------------- l=16 a=0 c*
--------------------------------------------------------------------UCGGACGUAUAUUGACUACUC l=21 a=22 ma
GAAGUUGAUAUCGAGU------------------------------------------------------------------------- l=16 a=0 ma*

---------------------------AUCUCUGAAAUUUCUAUGG------------------------------------------- l=19 a=1 
--------------------------------------------------------------------UCGGACGUAUAUUGACUACU- l=20 a=6 
--------------------------------------------------------------------UCGGACGUAUAUUGACUACUC l=21 a=22 (c,ma)

mb-01010
ax-1011111
ku-01
ss-111111101010
fn-111
